Varietas | Tool name | Varietas |
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| URL | http://kokki.uku.fi/bioinformatics/varietas/ |
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| Important features | 1. It has details on SNP, CNV and indels in batches.
2. It also gives details about related genes, phenotypes and disease.
3. It receives data from Ensembl genome database, NCBI dbSNP database, The Genomic Association Database (GAD), OMIM, WikiGenes and SNPedia.
4. It converts SNPs to gene sets. |
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| Citations | Paananen J, Ciszek R, Wong G. Varietas: a functional variation database portal. Database (Oxford). 2010 Jul 29;2010:baq016. Print 2010. PubMed PMID:
20671203; PubMed Central PMCID: PMC2997604. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Visualization, SNP discovery |
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| Category | Free, Online |
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| License | |
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| Status | Working |
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| Input file format | |
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| Output file format | |
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| Operating system | |
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| Operating language | |
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| Platform | ABI SOLiD, Illumina/Solexa, Roche 454 |
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| Maintained by |
Functional Genomics and Bioinformatics |
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| Downloadable file format | Excel sheet format |
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| Submission file format | |
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